Compound ujoint angle vibration?

I have a vibration that I can't get rid of. Plz help.
Motor, trans, front diff rebuilt in last 2 yrs. All wheel seals and bearings replaced less 3 months, ride hight for air leaf is set 11.7 + center of rear axle to floor. Set in between drives. Motor mounts and torque bars new. Shocks 6 months ago, when kingpins, tie rods, and hangers and bushings. Blocks and bushings in rear. 3 axle alignment. All tires tested repeatedly off and on truck.
98 peterbilt 13 speed eaton and 3.70 rears. Rear pionion shaft is off center a little to driver side.
Can a 3 axle alignment affect your ujoint angles on a compound angle setup like these? Don't want to waste all this $$ by just working it to do all over again. She's almost a new truck.

 

Vibration is mostly around 57-62. But I swear I feel it lightly around 35-40. 55-65 made start with tires and wheels. Drive line was just rebuilt and still in shop now because it just become evident

 

Took Truck to trans, driveline, rear-end shop for a growl n trans area. After new slip yokes and u joints (caps spinning/wore) started vibration/hop. They said they checked all angles and tire guy checked tires. Alignment shop has checked alignment but still vibrates

 

To answer question both. Mainly 57-62.

 

More of a shake hope but alignment shop said they also spun on truck, nothing. After driveline repair, this showed up and then after tires and alignment shop driveline redropped and they found 3 thousandths weldon mistake (they didn't make) and fixed and cut it down by 50%. Which still makes me believe it's still somewhere there. Maybe compound angles from rear pinion being off set from above and side view

 

Shop is starting to act like they are done. Can't figure it out. Just wanting to see if I can get more great minds on this to see if something is missed.
I know phase angles have to be less than 1* from top view and side view and compound angles with those have to be figured too.
Can alignment shims affect pinion angle? Wondering if that started this problem